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Biomodels LLC
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Image Search Results
Journal: PLoS ONE
Article Title: A Unique Transformation from Ordinary Differential Equations to Reaction Networks
doi: 10.1371/journal.pone.0014284
Figure Lengend Snippet: The incorrect structure of the corresponding SBML models (93 and 94) of the BioModels database can be automatically fixed by going back to the differential equations and extracting the unique structure fulfilling our three conditions. It then correctly includes the reversibility of reactions (1), (2), (3), (6), etc. highlighted in red, and absent from the BioModels database version.
Article Snippet: The XPPAUT.ode file (BIOMD151.ode) and the resulting structured
Techniques:
Journal: PLoS ONE
Article Title: A Unique Transformation from Ordinary Differential Equations to Reaction Networks
doi: 10.1371/journal.pone.0014284
Figure Lengend Snippet: The 68 ODEs actually allow the extraction of a unique model fulfilling the three established conditions. It not only correctly reflects the structure described in the article, but also avoids the typos introduced in the hand-written model 151 of the BioModels database; hand-typing an SBML model for that many ODEs with numerous parameters is definitely error-prone.
Article Snippet: The XPPAUT.ode file (BIOMD151.ode) and the resulting structured
Techniques: Extraction